MolNFT v1 · #159411 · protein
Structural elucidation of the ectodomain of mouse UNC5H2
6OOL · Netrin receptor UNC5B: “Structural elucidation of the ectodomain of mouse UNC5H2”. X-ray diffraction, 4 ligands (NAG, MAN, FUC). MolNFT v1 #159411 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6OOL
- Type
- protein
- Length
- 244 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Netrin receptor UNC5B
- UniProt
- Q8K1S3
- Ligands
- NAG, MAN, FUC, CL
Structure
x-ray diffraction · 1 distinct chain · 2% helix, 46% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Netrin receptor UNC5B | protein | 244 | 2% helix, 46% strand | Q8K1S3 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains A
- MAN · alpha-D-mannopyranose · sugar · 2 copies · chains A
- FUC · alpha-L-fucopyranose · sugar · chains A
- CL · Chloride ion · ion · 13 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 5 disulfide, 3 glycan (disulfide, C-mannosylation, N-glycosylation).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8K1S3
- Elsewhere: RCSB PDB 6OOL · PDBe 6OOL · UniProt Q8K1S3
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