MolNFT v1 · #159342 · protein

Glycosylated BMP2 homodimer

6OMN: “Glycosylated BMP2 homodimer”. X-ray diffraction, 3 ligands (NAG, MAN, BMA). MolNFT v1 #159342 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6OMN
Type: protein
Length: 421 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P12643
Ligands: NAG, MAN, BMA

Structure

x-ray diffraction · 4 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
E	—	protein	103	—	P12643
F	—	protein	106	—	P12643
G	—	protein	108	—	P12643
H	—	protein	104	—	P12643

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 8 copies · chains E, F, G, H
MAN · alpha-D-mannopyranose · sugar · 8 copies · chains E, F, G, H
BMA · beta-D-mannopyranose · sugar · 4 copies · chains E, F, G, H

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6OMN · Glycosylated BMP2 homodimer · the same entry in another collection · chain H against H, TM-score 1.00
P12643 · AlphaFold monomer V2.0 prediction for bone morphogenetic protein 2 (P12643) · a predicted model of the same protein · chain H against A, TM-score 0.94

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P12643
Elsewhere: RCSB PDB 6OMN · PDBe 6OMN · UniProt P12643

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