MolNFT v1 · #159252 · protein
A high-resolution crystal structure of covalent complex of nocb thioesterase domain with fluorophosphonate nocardicin G analog
6OJD: “A high-resolution crystal structure of covalent complex of nocb thioesterase domain with fluorophosphonate…”. X-ray diffraction, 2 ligands (MUY, CA). MolNFT v1 #159252 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6OJD
- Type
- protein
- Length
- 899 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q5J1Q6
- Ligands
- MUY, CA
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 227 | — | Q5J1Q6 |
| B | — | protein | 226 | — | Q5J1Q6 |
| C | — | protein | 224 | — | Q5J1Q6 |
| D | — | protein | 222 | — | Q5J1Q6 |
Ligands and binding sites
- MUY · (R)-[(S)-[(3S)-3-{[(2R)-2-amino-2-(4-hydroxyphenyl) acetyl]amino}-2-oxoazetidin-1-yl](4-hydroxyphenyl) methyl]methylphosphinic acid · ligand · 4 copies · chains A, B, C, D
- CA · Calcium ion · metal · 4 copies · chains A, B, C
- GOL · Glycerol · additive · 12 copies · chains A, D, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6OJD · A high-resolution crystal structure of covalent complex of NocB thioesterase domain with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5J1Q6
- Elsewhere: RCSB PDB 6OJD · PDBe 6OJD · UniProt Q5J1Q6
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