MolNFT v1 · #15903 · protein
Mannose-specific agglutinin (lectin) from snowdrop (galanthus nivalis) bulbs in complex with mannose-alpha 1,3-methyl-D-mannose
1NIV: “Mannose-specific agglutinin (lectin) from snowdrop (galanthus nivalis) bulbs in complex with mannose-alpha…”. X-ray diffraction, 2 ligands (MMA, MAN). MolNFT v1 #15903 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1NIV
- Type
- protein
- Length
- 216 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Agglutinin
- UniProt
- P30617
- Ligands
- MMA, MAN
Structure
x-ray diffraction · 1 distinct chain · 0% helix, 44% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | Agglutinin | protein | 108 | 0% helix, 44% strand | P30617 |
Ligands and binding sites
- MMA · methyl alpha-D-mannopyranoside · sugar · 6 copies · chains A, C
- MAN · alpha-D-mannopyranose · sugar · 3 copies · chains A, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 1NIV · Mannose-specific agglutinin (lectin) from snowdrop (galanthus nivalis) bulbs in complex… · the same entry in another collection · chain A against A, TM-score 1.00
- P30617 · AlphaFold monomer V2.0 prediction for mannose-specific lectin (P30617) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P30617
- Elsewhere: RCSB PDB 1NIV · PDBe 1NIV · UniProt P30617
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