MolNFT v1 · #158966 · protein
Superfolder green fluorescent protein with 4-cyano-L-phenylalanine at the chromophore (position 66)
6OA8: “Superfolder green fluorescent protein with 4-cyano-L-phenylalanine at the chromophore (position 66)”. X-ray diffraction, 2 ligands (NA, SO4), 1 pocket (best druggability 0.42). MolNFT v1 #158966 on GenesisL1: 3D structure, binding…
- PDB
- 6OA8
- Type
- protein
- Length
- 233 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Green fluorescent protein
- UniProt
- A0A059PIQ0
- Ligands
- NA, SO4
- Pockets
- 1 · best druggability 0.42
Structure
x-ray diffraction · 1 distinct chain · 13% helix, 51% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Green fluorescent protein | protein | 233 | 13% helix, 51% strand | A0A059PIQ0 |
Ligands and binding sites
- NA · Sodium ion · metal · 4 copies · chains A
- SO4 · Sulfate ion · ion · 8 copies · chains A
- EDO · 1,2-ethanediol · additive · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 56 | 0.42 | 0.82 | 16 | empty |
Modifications
Observed in the structure: 1 modified (nonstandard).
Compared structures
- 6OA8 · Superfolder Green Fluorescent Protein with 4-cyano-L-phenylalanine at the chromophore… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A059PIQ0
- Elsewhere: RCSB PDB 6OA8 · PDBe 6OA8 · UniProt A0A059PIQ0
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