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MolNFT v1 · #158917 · protein + DNA

Crystal structure of uvrb bound to duplex DNA

6O8F: “Crystal structure of uvrb bound to duplex DNA”. X-ray diffraction, 2 ligands (MG, CL). MolNFT v1 #158917 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6O8F
Type
protein + DNA
Length
1,262 residues
Chains
6
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P56981
Ligands
MG, CL

Structure

x-ray diffraction · 4 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein591—P56981
B—protein591—P56981
C, E—dna20——
D, F—dna20——

Ligands and binding sites

  • MG · Magnesium ion · metal · 4 copies · chains A
  • CL · Chloride ion · ion
  • ACT · Acetate ion · additive · chains A, C, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6O8F · Crystal structure of UvrB bound to duplex DNA · the same entry in another collection · chain F against F, TM-score 1.00
  • P56981 · AlphaFold monomer V2.0 prediction for uvrabc system protein B (P56981) · a predicted model of the same protein · chain A against A, TM-score 0.99

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