MolNFT v1 · #158910 · protein
Crystal structure of udp-dependent glucosyltransferases (ugt) from stevia rebaudiana in complex with udp and rebaudioside a
6O88 · Udp-glycosyltransferase 76G1: “Crystal structure of udp-dependent glucosyltransferases (ugt) from stevia rebaudiana in complex with udp and…”. X-ray diffraction, 2 ligands (UDP, LRV), 2 pockets (best druggability 0.81). MolNFT v1…
- PDB
- 6O88
- Type
- protein
- Length
- 443 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Udp-glycosyltransferase 76G1
- EC
- 2.4.1.-
- UniProt
- Q6VAB4
- Ligands
- UDP, LRV
- Pockets
- 2 · best druggability 0.81
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Udp-glycosyltransferase 76G1 (EC 2.4.1.-) | protein | 443 | 45% helix, 16% strand | Q6VAB4 |
Ligands and binding sites
- UDP · Uridine-5'-diphosphate · ligand · chains A
- LRV · (8alpha,9beta,10alpha,13alpha)-13-{[alpha-L-allopyranosyl-(1->2)-[beta-D-mannopyranosyl-(1->3)]-beta-D-allopyranosyl]oxy}kauran-18-oic acid · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 958 | 0.81 | 0.83 | 77 | UDP, LRV |
| 2 | 63 | 0.34 | 0.77 | 17 | empty |
Compared structures
- 6O88 · Crystal Structure of UDP-dependent glucosyltransferases (UGT) from Stevia rebaudiana in… · the same entry in another collection · chain A against A, TM-score 1.00
- Q6VAB4 · AlphaFold monomer V2.0 prediction for udp-glycosyltransferase 76G1 (Q6VAB4) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6VAB4
- Elsewhere: RCSB PDB 6O88 · PDBe 6O88 · UniProt Q6VAB4
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