MolNFT v1 · #158909 · protein
Crystal structure of udp-dependent glucosyltransferases (ugt) from stevia rebaudiana in complex with udp
6O87 · Udp-glycosyltransferase 76G1: “Crystal structure of udp-dependent glucosyltransferases (ugt) from stevia rebaudiana in complex with udp”. X-ray diffraction, 1 ligand (UDP), 6 pockets (best druggability 0.81). MolNFT v1 #158909 on…
- PDB
- 6O87
- Type
- protein
- Length
- 443 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Udp-glycosyltransferase 76G1
- EC
- 2.4.1.-
- UniProt
- Q6VAB4
- Ligands
- UDP
- Pockets
- 6 · best druggability 0.81
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Udp-glycosyltransferase 76G1 (EC 2.4.1.-) | protein | 443 | 45% helix, 15% strand | Q6VAB4 |
Ligands and binding sites
- UDP · Uridine-5'-diphosphate · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 924 | 0.81 | 0.83 | 73 | UDP |
| 2 | 50 | 0.41 | 0.83 | 11 | empty |
| 3 | 59 | 0.33 | 0.76 | 12 | empty |
| 4 | 58 | 0.30 | 0.75 | 16 | empty |
| 5 | 51 | 0.28 | 0.75 | 17 | empty |
Compared structures
- 6O87 · Crystal Structure of UDP-dependent glucosyltransferases (UGT) from Stevia rebaudiana in… · the same entry in another collection · chain A against A, TM-score 1.00
- Q6VAB4 · AlphaFold monomer V2.0 prediction for udp-glycosyltransferase 76G1 (Q6VAB4) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6VAB4
- Elsewhere: RCSB PDB 6O87 · PDBe 6O87 · UniProt Q6VAB4
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