MolNFT v1 · #158593 · protein

MUNC13-1 C2B-domain, calcium bound

6NYT · Protein unc-13 homolog a: “MUNC13-1 C2B-domain, calcium bound”. X-ray diffraction, 2 ligands (CA, CL). MolNFT v1 #158593 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6NYT
Type: protein
Length: 135 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein unc-13 homolog a
UniProt: Q62768
Ligands: CA, CL

Structure

x-ray diffraction · 1 distinct chain · 7% helix, 49% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein unc-13 homolog a	protein	135	7% helix, 49% strand	Q62768

Ligands and binding sites

CA · Calcium ion · metal · 2 copies · chains A
CL · Chloride ion · ion · 2 copies · chains A
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6NYT · Munc13-1 C2B-domain, calcium bound · the same entry in another collection · chain A against A, TM-score 1.00
Q62768 · AlphaFold monomer V2.0 prediction for protein unc-13 homolog a (Q62768) · a predicted model of the same protein · chain A against A, TM-score 0.90

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q62768
Elsewhere: RCSB PDB 6NYT · PDBe 6NYT · UniProt Q62768

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