MolNFT v1 · #158588 · protein
Crystal structure of a human CDC34-ubiquitin thioester mimetic
6NYO: “Crystal structure of a human CDC34-ubiquitin thioester mimetic”. X-ray diffraction, 2 ligands (U94, PO4). MolNFT v1 #158588 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6NYO
- Type
- protein
- Length
- 266 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q712K3
- Ligands
- U94, PO4
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 188 | — | Q712K3 |
| E | — | protein | 78 | — | — |
Ligands and binding sites
- U94 · 4,5-dideoxy-5-(3',5'-dichlorobiphenyl-4-yl)-4-[(methoxyacetyl)amino]-L-arabinonic acid · ligand · chains A, E
- PO4 · Phosphate ion · ion · chains A
- EDO · 1,2-ethanediol · additive · 3 copies · chains A, E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6NYO · Crystal structure of a human Cdc34-ubiquitin thioester mimetic · the same entry in another collection · chain A against A, TM-score 1.00
- Q712K3 · AlphaFold monomer V2.0 prediction for ubiquitin-conjugating enzyme E2 R2 (Q712K3) · a predicted model of the same protein · chain A against A, TM-score 0.92
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q712K3
- Elsewhere: RCSB PDB 6NYO · PDBe 6NYO · UniProt Q712K3
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