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MolNFT v1 · #158406 · protein

X-ray reduced catalase 3 from N.CRASSA in cpd I state (0.135 mgy)

6NSW: “X-ray reduced catalase 3 from N.CRASSA in cpd I state (0.135 mgy)”. X-ray diffraction, 2 ligands (HEM, O). MolNFT v1 #158406 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6NSW
Type
protein
Length
2,715 residues
Chains
4
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
Q9C169
Ligands
HEM, O

Structure

x-ray diffraction · 4 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein682—Q9C169
B—protein677—Q9C169
C—protein679—Q9C169
D—protein677—Q9C169

Ligands and binding sites

  • HEM · Protoporphyrin IX containing Fe · ligand · 4 copies · chains A, D, B, C
  • O · Oxygen atom · ion · 4 copies · chains A, B, C, D
  • EDO · 1,2-ethanediol · additive · 10 copies · chains A, B, C, D
  • ACT · Acetate ion · additive · 8 copies · chains A, B, C, D
  • EOH · Ethanol · additive · 5 copies · chains A, B, D
  • PEG · Di(hydroxyethyl)ether · additive · 4 copies · chains A, C
  • PGE · Triethylene glycol · additive · 3 copies · chains A, B, D
  • 1PE · Pentaethylene glycol · additive · chains B, C
  • PG4 · Tetraethylene glycol · additive · chains C

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6NSW · X-ray reduced Catalase 3 From N.Crassa in Cpd I state (0.135 MGy) · the same entry in another collection · chain D against D, TM-score 1.00
  • Q9C169 · AlphaFold monomer V2.0 prediction for catalase-3 (Q9C169) · a predicted model of the same protein · chain A against A, TM-score 1.00

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