MolNFT v1 · #158323 · protein
Xanthomonas citri pgm apo-phospho at room temperature
6NQF · Phosphoglucomutase: “Xanthomonas citri pgm apo-phospho at room temperature”. X-ray diffraction, 1 ligand (CA), 3 pockets (best druggability 0.66). MolNFT v1 #158323 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6NQF
- Type
- protein
- Length
- 448 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phosphoglucomutase
- UniProt
- Q8PGN7
- Ligands
- CA
- Pockets
- 3 · best druggability 0.66
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phosphoglucomutase | protein | 448 | 41% helix, 22% strand | Q8PGN7 |
Ligands and binding sites
- CA · Calcium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 547 | 0.66 | 0.77 | 50 | empty |
| 2 | 63 | 0.30 | 0.75 | 14 | empty |
| 3 | 55 | 0.30 | 0.76 | 13 | empty |
Modifications
Observed in the structure: 1 modified (phosphorylation).
Compared structures
- 6NQF · Xanthomonas citri PGM Apo-Phospho at room temperature · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8PGN7
- Elsewhere: RCSB PDB 6NQF · PDBe 6NQF · UniProt Q8PGN7
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