MolNFT v1 · #158226 · protein

Xanthomonas citri dephospho-pgm in complex with glucose-6-phosphate

6NNP · Phosphoglucomutase: “Xanthomonas citri dephospho-pgm in complex with glucose-6-phosphate”. X-ray diffraction, 3 ligands (G6P, MG, PO4), 2 pockets (best druggability 0.75). MolNFT v1 #158226 on GenesisL1: 3D structure, binding sites…

PDB: 6NNP
Type: protein
Length: 448 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Phosphoglucomutase
UniProt: Q8PGN7
Ligands: G6P, MG, PO4
Pockets: 2 · best druggability 0.75

Structure

x-ray diffraction · 1 distinct chain · 41% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Phosphoglucomutase	protein	448	41% helix, 21% strand	Q8PGN7

Ligands and binding sites

G6P · 6-O-phosphono-alpha-D-glucopyranose · sugar · chains A
MG · Magnesium ion · metal · chains A
PO4 · Phosphate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	440	0.75	0.84	56	G6P, PO4
2	62	0.31	0.75	14	empty

Compared structures

6NNP · Xanthomonas citri Dephospho-PGM in complex with glucose-6-phosphate · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8PGN7
Elsewhere: RCSB PDB 6NNP · PDBe 6NNP · UniProt Q8PGN7

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