MolNFT v1 · #158223 · protein

Crystal structure of HIV-1 BG505 SOSIP.664 prefusion env trimer bound to CH31 scfv in complex with crystallization chaperones 3H109L Fab and 35O22 scfv at 3.1 ångström

6NNJ: “Crystal structure of HIV-1 BG505 SOSIP.664 prefusion env trimer bound to CH31 scfv in complex with…”. X-ray diffraction, 3 ligands (NAG, MAN, BMA). MolNFT v1 #158223 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6NNJ
Type: protein
Length: 1,461 residues
Chains: 8
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q2N0S6
Ligands: NAG, MAN, BMA

Structure

x-ray diffraction · 8 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B	—	protein	127	—	Q2N0S6
D	—	protein	128	—	—
E	—	protein	110	—	—
G	—	protein	430	—	Q2N0S6
H	—	protein	226	—	—
L	—	protein	210	—	—
U	—	protein	129	—	—
V	—	protein	101	—	—

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 25 copies · chains B, D, G, V, H, U
MAN · alpha-D-mannopyranose · sugar · 13 copies · chains D, E, H, L
BMA · beta-D-mannopyranose · sugar · 4 copies · chains D, E, H

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6NNJ · Crystal Structure of HIV-1 BG505 SOSIP.664 Prefusion Env Trimer Bound to CH31 scFv in… · the same entry in another collection · chain B against B, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q2N0S6
Elsewhere: RCSB PDB 6NNJ · PDBe 6NNJ · UniProt Q2N0S6

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