MolNFT v1 · #158144 · protein

Crystal structure of B1 immunoglobulin-binding domain of streptococcal protein G (T16F, T18A, V21H, T25H, K28Y, V29I, K31R, Q32A, Y33L, N35K, D36A, N37Q)

6NL7: “Crystal structure of B1 immunoglobulin-binding domain of streptococcal protein G (T16F, T18A, V21H, T25H…”. X-ray diffraction, 5 ligands (DPO, ZN, NA). MolNFT v1 #158144 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6NL7
Type: protein
Length: 224 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P19909
Ligands: DPO, ZN, NA, PO4, CL

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D	—	protein	56	—	P19909

Ligands and binding sites

DPO · Diphosphate · ligand · chains A, B
ZN · Zinc ion · metal · 4 copies · chains A, B
NA · Sodium ion · metal · 4 copies · chains A, B, C, D
PO4 · Phosphate ion · ion · 2 copies · chains A, B
CL · Chloride ion · ion · chains A
ACT · Acetate ion · additive · 8 copies · chains A, B, C, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6NL7 · Crystal structure of B1 immunoglobulin-binding domain of Streptococcal Protein G (T16F… · the same entry in another collection · chain A against A, TM-score 1.00
P19909 · AlphaFold monomer V2.0 prediction for immunoglobulin G-binding protein G (P19909) · a predicted model of the same protein · chain A against A, TM-score 0.94

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P19909
Elsewhere: RCSB PDB 6NL7 · PDBe 6NL7 · UniProt P19909

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