MolNFT v1 · #158117 · protein
Crystal structure of the lipase LIP_VUT5 from goat rumen metagenome.
6NKG · LIP_VUT5, C4L: “Crystal structure of the lipase LIP_VUT5 from goat rumen metagenome.”. X-ray diffraction, 1 pocket (best druggability 0.64). MolNFT v1 #158117 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6NKG
- Type
- protein
- Length
- 245 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- LIP_VUT5, C4L
- UniProt
- Q65EQ1
- Pockets
- 1 · best druggability 0.64
Structure
x-ray diffraction · 1 distinct chain · 44% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | LIP_VUT5, C4L | protein | 245 | 44% helix, 14% strand | Q65EQ1 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 282 | 0.64 | 0.80 | 40 | ACY |
Modifications
Observed in the structure: 9 modified (engineered).
Compared structures
- 6NKG · Crystal Structure of the Lipase Lip_vut5 from Goat Rumen metagenome. · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q65EQ1
- Elsewhere: RCSB PDB 6NKG · PDBe 6NKG · UniProt Q65EQ1
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