MolNFT v1 · #158060 · protein
Crystal structure of a human anti-zikv-denv neutralizing antibody MZ4 in complex with zikv E glycoprotein
6NIU · Human MZ4 Fab heavy chain: “Crystal structure of a human anti-zikv-denv neutralizing antibody MZ4 in complex with zikv E glycoprotein”. X-ray diffraction, 20 pockets (best druggability 0.73). MolNFT v1 #158060 on GenesisL1: 3D…
- PDB
- 6NIU
- Type
- protein
- Length
- 2,520 residues
- Chains
- 12
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Human MZ4 Fab heavy chain; Human MZ4 Fab light chain; Envelope protein E
- UniProt
- A0A024B7W1
- Pockets
- 20 · best druggability 0.73
Structure
x-ray diffraction · 3 distinct chains · 6% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| H, F, I, M | Human MZ4 Fab heavy chain | protein | 120 | 3% helix, 47% strand | — |
| L, G, J, N | Human MZ4 Fab light chain | protein | 111 | 3% helix, 46% strand | — |
| B, A, Z, E | Envelope protein E | protein | 399 | 8% helix, 45% strand | A0A024B7W1 |
Pockets
20 pockets found on a 1 Å grid, 14 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 722 | 0.73 | 0.79 | 73 | empty |
| 2 | 470 | 0.72 | 0.82 | 72 | empty |
| 3 | 748 | 0.70 | 0.77 | 75 | empty |
| 4 | 431 | 0.68 | 0.80 | 53 | empty |
| 5 | 436 | 0.67 | 0.79 | 65 | empty |
Interfaces
16 interfaces between chains.
- Z–E · 1624 Ų buried · 11 hydrogen bonds · protein-protein
- B–A · 1601 Ų buried · 21 hydrogen bonds · protein-protein
- F–G · 1037 Ų buried · 10 hydrogen bonds · protein-protein
- I–J · 1017 Ų buried · 13 hydrogen bonds · protein-protein
- M–N · 1012 Ų buried · 13 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 32 disulfide (disulfide).
Compared structures
- 6NIU · Crystal structure of a human anti-ZIKV-DENV neutralizing antibody MZ4 in complex with… · the same entry in another collection · chain H against H, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A024B7W1
- Elsewhere: RCSB PDB 6NIU · PDBe 6NIU · UniProt A0A024B7W1
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