MolNFT v1 · #157939 · protein
VAV1 inhibited by an allosteric inhibitor: VAV1 inhibitors block gef activity
6NFA · Proto-oncogene vav: “VAV1 inhibited by an allosteric inhibitor: VAV1 inhibitors block gef activity”. X-ray diffraction, 2 ligands (9K1, ZN), 4 pockets (best druggability 0.61). MolNFT v1 #157939 on GenesisL1: 3D structure, binding…
- PDB
- 6NFA
- Type
- protein
- Length
- 386 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Proto-oncogene vav
- UniProt
- P15498
- Ligands
- 9K1, ZN
- Pockets
- 4 · best druggability 0.61
Structure
x-ray diffraction · 1 distinct chain · 55% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Proto-oncogene vav | protein | 386 | 55% helix, 17% strand | P15498 |
Ligands and binding sites
- 9K1 · (2S)-2-{[3-(4-methylphenyl)imidazo[1,2-a]pyrazin-8-yl]amino}-3-(pyridin-3-yl)propan-1-ol · ligand · chains A
- ZN · Zinc ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 177 | 0.61 | 0.83 | 29 | 9K1 |
| 2 | 141 | 0.43 | 0.76 | 24 | empty |
| 3 | 55 | 0.31 | 0.76 | 15 | empty |
| 4 | 59 | 0.30 | 0.74 | 11 | empty |
Compared structures
- 6NFA · Vav1 inhibited by an allosteric inhibitor: Vav1 inhibitors block GEF activity · the same entry in another collection · chain A against A, TM-score 1.00
- P15498 · AlphaFold monomer V2.0 prediction for proto-oncogene vav (P15498) · a predicted model of the same protein · chain A against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P15498
- Elsewhere: RCSB PDB 6NFA · PDBe 6NFA · UniProt P15498
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