MolNFT v1 · #157807 · protein
SARS-cov complex with human neutralizing S230 antibody Fab fragment (state 2)
6NB7: “SARS-cov complex with human neutralizing S230 antibody Fab fragment (state 2)”. Electron microscopy, 3 ligands (NAG, BMA, MAN). MolNFT v1 #157807 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6NB7
- Type
- protein
- Length
- 3,828 residues
- Chains
- 9
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P59594
- Ligands
- NAG, BMA, MAN
Structure
electron microscopy · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 1049 | — | P59594 |
| B | — | protein | 1032 | — | P59594 |
| C | — | protein | 1048 | — | P59594 |
| D, G, H | — | protein | 123 | — | — |
| E, I, L | — | protein | 110 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 90 copies · chains A, C, B
- BMA · beta-D-mannopyranose · sugar · 31 copies
- MAN · alpha-D-mannopyranose · sugar · 16 copies
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6NB7 · SARS-CoV complex with human neutralizing S230 antibody Fab fragment (state 2) · the same entry in another collection · chain C against C, TM-score 1.00
- 3SCI · Crystal structure of spike protein receptor-binding domain from a predicted SARS… · a predicted model of the same protein · chain C against E, TM-score 0.16
- 3SCI · Crystal structure of spike protein receptor-binding domain from a predicted SARS… · a predicted model of the same protein · chain C against E, TM-score 0.16
- 3SCJ · Crystal structure of spike protein receptor-binding domain from a predicted SARS… · a predicted model of the same protein · chain C against E, TM-score 0.16
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P59594
- Elsewhere: RCSB PDB 6NB7 · PDBe 6NB7 · UniProt P59594
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