MolNFT v1 · #157486 · protein
Crystal structure of arabidopsis thaliana mevalonate 5-diphosphate decarboxylase 1 complexed with (R)-mvapp
6N10: “Crystal structure of arabidopsis thaliana mevalonate 5-diphosphate decarboxylase 1 complexed with (R)-mvapp”. X-ray diffraction, 2 ligands (DP6, SO4). MolNFT v1 #157486 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6N10
- Type
- protein
- Length
- 403 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- O23722
- Ligands
- DP6, SO4
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 403 | — | O23722 |
Ligands and binding sites
- DP6 · (3R)-3-hydroxy-5-{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}-3-methylpentanoic acid · ligand · chains A
- SO4 · Sulfate ion · ion · 4 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6N10 · Crystal structure of Arabidopsis thaliana mevalonate 5-diphosphate decarboxylase 1… · the same entry in another collection · chain A against A, TM-score 1.00
- O23722 · AlphaFold monomer V2.0 prediction for diphosphomevalonate decarboxylase MVD1, peroxisomal… · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O23722
- Elsewhere: RCSB PDB 6N10 · PDBe 6N10 · UniProt O23722
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