MolNFT v1 · #15747 · protein

Ydce protein from bacillus subtilis

1NE8 · Conserved hypothetical protein ydce: “Ydce protein from bacillus subtilis”. X-ray diffraction, 1 ligand (1PG). MolNFT v1 #15747 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1NE8
Type: protein
Length: 116 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Conserved hypothetical protein ydce
UniProt: P96622
Ligands: 1PG

Structure

x-ray diffraction · 1 distinct chain · 23% helix, 37% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Conserved hypothetical protein ydce	protein	116	23% helix, 37% strand	P96622

Ligands and binding sites

1PG · 2-(2-{2-[2-(2-methoxy-ethoxy)-ethoxy]-ethoxy}-ethoxy)-ethanol · ligand · 2 copies · chains A
ACY · Acetic acid · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

1NE8 · YDCE protein from Bacillus subtilis · the same entry in another collection · chain A against A, TM-score 1.00
P96622 · AlphaFold monomer V2.0 prediction for endoribonuclease endoa (P96622) · a predicted model of the same protein · chain A against A, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P96622
Elsewhere: RCSB PDB 1NE8 · PDBe 1NE8 · UniProt P96622

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