MolNFT v1 · #157221 · protein
Crystal structure of the GH43 blxynb protein from bacillus licheniformis
6MS2 · Glycoside hydrolase family 43: “Crystal structure of the GH43 blxynb protein from bacillus licheniformis”. X-ray diffraction, 1 ligand (CA), 4 pockets (best druggability 0.63). MolNFT v1 #157221 on GenesisL1: 3D structure, binding…
- PDB
- 6MS2
- Type
- protein
- Length
- 511 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glycoside hydrolase family 43
- UniProt
- Q65MB6
- Ligands
- CA
- Pockets
- 4 · best druggability 0.63
Structure
x-ray diffraction · 1 distinct chain · 1% helix, 49% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glycoside hydrolase family 43 | protein | 511 | 1% helix, 49% strand | Q65MB6 |
Ligands and binding sites
- CA · Calcium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 290 | 0.63 | 0.80 | 25 | empty |
| 2 | 201 | 0.56 | 0.79 | 30 | empty |
| 3 | 173 | 0.49 | 0.77 | 27 | empty |
| 4 | 119 | 0.43 | 0.77 | 18 | empty |
Compared structures
- 6MS2 · Crystal structure of the GH43 BlXynB protein from Bacillus licheniformis · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q65MB6
- Elsewhere: RCSB PDB 6MS2 · PDBe 6MS2 · UniProt Q65MB6
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