MolNFT v1 · #157128 · protein
X-ray crystal structure of vioc bound to FE(II), 2-oxo-5- guanidinopentanoic acid, and succinate
6MP9: “X-ray crystal structure of vioc bound to FE(II), 2-oxo-5- guanidinopentanoic acid, and succinate”. X-ray diffraction, 2 ligands (JX7, FE2). MolNFT v1 #157128 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6MP9
- Type
- protein
- Length
- 332 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q6WZB0
- Ligands
- JX7, FE2
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 332 | — | Q6WZB0 |
Ligands and binding sites
- JX7 · 5-carbamimidamido-2-oxopentanoic acid · ligand · chains A
- FE2 · Fe (II) ion · metal · chains A
- SIN · Succinic acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6MP9 · X-ray crystal structure of VioC bound to Fe(II), 2-oxo-5-guanidinopentanoic acid, and… · the same entry in another collection · chain A against A, TM-score 1.00
- Q6WZB0 · AlphaFold monomer V2.0 prediction for alpha-ketoglutarate-dependent L-arginine… · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6WZB0
- Elsewhere: RCSB PDB 6MP9 · PDBe 6MP9 · UniProt Q6WZB0
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