MolNFT v1 · #157127 · protein

X-ray crystal structure of vioc bound to FE(II), D-arginine, and 2- oxoglutarate

6MP8: “X-ray crystal structure of vioc bound to FE(II), D-arginine, and 2- oxoglutarate”. X-ray diffraction, 2 ligands (AKG, FE2). MolNFT v1 #157127 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6MP8
Type: protein
Length: 309 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q6WZB0
Ligands: AKG, FE2

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	309	—	Q6WZB0

Ligands and binding sites

AKG · 2-oxoglutaric acid · ligand · chains A
FE2 · Fe (II) ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6MP8 · X-ray crystal structure of VioC bound to Fe(II), D-arginine, and 2-oxoglutarate · the same entry in another collection · chain A against A, TM-score 1.00
Q6WZB0 · AlphaFold monomer V2.0 prediction for alpha-ketoglutarate-dependent L-arginine… · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q6WZB0
Elsewhere: RCSB PDB 6MP8 · PDBe 6MP8 · UniProt Q6WZB0

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