MolNFT v1 · #15696 · protein
Structural characterization of a 39 residue synthetic peptide containing the two zinc binding domains from the HIV-1 P7 nucleocapsid protein by CD and NMR spectroscopy
1NCP: “Structural characterization of a 39 residue synthetic peptide containing the two zinc binding domains from…”. Solution nmr, 1 ligand (ZN). MolNFT v1 #15696 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1NCP
- Type
- protein
- Length
- 35 residues
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- HIV-1 P7 nucleocapsid protein
- UniProt
- P04585, P24740
- Ligands
- ZN
Structure
solution nmr · 2 distinct chains · 0% helix, 83% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| N | HIV-1 P7 nucleocapsid protein | protein | 17 | 0% helix, 88% strand | P04585 |
| C | HIV-1 P7 nucleocapsid protein | protein | 18 | 0% helix, 78% strand | P24740 |
Ligands and binding sites
- ZN · Zinc ion · metal · 2 copies · chains N, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- N–C · 923 Ų buried · 117 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 3 disulfide (disulfide).
Compared structures
- 1NCP · Structural characterization of a 39 residue synthetic peptide containing the two zinc… · the same entry in another collection · chain N against N, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P04585
- Every structure of UniProt P24740
- Elsewhere: RCSB PDB 1NCP · PDBe 1NCP · UniProt P04585 · UniProt P24740
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