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Structural characterization of a 39 residue synthetic peptide containing the two zinc binding domains from the HIV-1 P7 nucleocapsid protein by CD and NMR spectroscopy

Analyse Structural characterization of a 39 residue synthetic peptide containing the… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1NCP
Type: protein
Length: 35 residues
Chains: 2
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: HIV-1 P7 nucleocapsid protein
UniProt: P04585, P24740
Ligands: ZN

Structure

solution nmr · 2 distinct chains · 0% helix, 83% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
N	HIV-1 P7 nucleocapsid protein	protein	17	0% helix, 88% strand	P04585
C	HIV-1 P7 nucleocapsid protein	protein	18	0% helix, 78% strand	P24740

Ligands and binding sites

ZN · Zinc ion · metal · 2 copies · chains N, C

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

N–C · 923 Å² buried · 117 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 3 disulfide (disulfide).

Compared structures

1NCP · Structural characterization of a 39 residue synthetic peptide containing the two zinc… · the same entry in another collection · chain N against N, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P04585
Every structure of UniProt P24740
Elsewhere: RCSB PDB 1NCP · PDBe 1NCP · UniProt P04585 · UniProt P24740

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