MolNFT v1 · #156936 · protein
Crystal structure of dutp pyrophosphatase protein, from naegleria fowleri in complex with deoxyuridine
6MJK: “Crystal structure of dutp pyrophosphatase protein, from naegleria fowleri in complex with deoxyuridine”. X-ray diffraction, 3 ligands (DUR, PPV, MG). MolNFT v1 #156936 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6MJK
- Type
- protein
- Length
- 144 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Dutp pyrophosphatase
- UniProt
- A0A1Z0YU86
- Ligands
- DUR, PPV, MG
Structure
x-ray diffraction · 1 distinct chain · 5% helix, 37% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Dutp pyrophosphatase | protein | 144 | 5% helix, 37% strand | A0A1Z0YU86 |
Ligands and binding sites
- DUR · 2'-deoxyuridine · ligand · chains A
- PPV · Pyrophosphate · ligand
- MG · Magnesium ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6MJK · Crystal Structure of dUTP pyrophosphatase protein, from Naegleria fowleri in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1Z0YU86
- Elsewhere: RCSB PDB 6MJK · PDBe 6MJK · UniProt A0A1Z0YU86
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