Research workbench
Crystal structure of dutp pyrophosphatase protein, from naegleria fowleri in complex with deoxyuridine
Analyse Crystal structure of dutp pyrophosphatase protein, from naegleria fowleri in… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6MJK
- Type
- protein
- Length
- 144 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Dutp pyrophosphatase
- UniProt
- A0A1Z0YU86
- Ligands
- DUR, PPV, MG
Structure
x-ray diffraction · 1 distinct chain · 5% helix, 37% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Dutp pyrophosphatase | protein | 144 | 5% helix, 37% strand | A0A1Z0YU86 |
Ligands and binding sites
- DUR · 2'-deoxyuridine · ligand · chains A
- PPV · Pyrophosphate · ligand
- MG · Magnesium ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6MJK · Crystal Structure of dUTP pyrophosphatase protein, from Naegleria fowleri in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1Z0YU86
- Elsewhere: RCSB PDB 6MJK · PDBe 6MJK · UniProt A0A1Z0YU86
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