MolNFT v1 · #156824 · protein
Untagged, wild-type lptb in complex with ADP
6MGF · Lipopolysaccharide export system ATP-binding protein lptb: “Untagged, wild-type lptb in complex with ADP”. X-ray diffraction, 3 ligands (ADP, CZJ, MG), 1 pocket (best druggability 0.48). MolNFT v1 #156824 on GenesisL1: 3D structure…
- PDB
- 6MGF
- Type
- protein
- Length
- 240 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lipopolysaccharide export system ATP-binding protein lptb
- EC
- 3.6.3.-
- UniProt
- P0A9V1
- Ligands
- ADP, CZJ, MG
- Pockets
- 1 · best druggability 0.48
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lipopolysaccharide export system ATP-binding protein lptb (EC 3.6.3.-) | protein | 240 | 38% helix, 27% strand | P0A9V1 |
Ligands and binding sites
- ADP · Adenosine-5'-diphosphate · ligand · chains A
- CZJ · (3S,5S,7S)-N-{7-[(3-O-carbamoyl-6-deoxy-5-methyl-4-O-methyl-beta-D-gulopyranosyl)oxy]-4-hydroxy-8-methyl-2-oxo-2H-1-ben zopyran-3-yl}tricyclo[3.3.1.1~3, 7~]decane-1-carboxamide · ligand · chains A
- MG · Magnesium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 179 | 0.48 | 0.76 | 26 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A9V1
- Elsewhere: RCSB PDB 6MGF · PDBe 6MGF · UniProt P0A9V1
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