MolNFT v1 · #156802 · protein
Crystal structure of glycosylated 426C HIV-1 GP120 core G459C in complex with GLVRC01 A60C heavy chain
6MFT: “Crystal structure of glycosylated 426C HIV-1 GP120 core G459C in complex with GLVRC01 A60C heavy chain”. X-ray diffraction, 3 ligands (NAG, MAN, BMA). MolNFT v1 #156802 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6MFT
- Type
- protein
- Length
- 1,520 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- NAG, MAN, BMA
Structure
x-ray diffraction · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| H | — | protein | 216 | — | — |
| L | — | protein | 208 | — | — |
| A | — | protein | 215 | — | — |
| B | — | protein | 209 | — | — |
| G, C | — | protein | 336 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 21 copies · chains L, G, C, B, H, A
- MAN · alpha-D-mannopyranose · sugar · 5 copies · chains G, C
- BMA · beta-D-mannopyranose · sugar · 2 copies
- EDO · 1,2-ethanediol · additive · 2 copies · chains C
- PEG · Di(hydroxyethyl)ether · additive · chains H, G
- CIT · Citric acid · additive · chains C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6MFT · Crystal structure of glycosylated 426c HIV-1 gp120 core G459C in complex with glVRC01… · the same entry in another collection · chain H against H, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6MFT · PDBe 6MFT
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