MolNFT v1 · #156582 · protein
Crystal structure of ubix-like FMN prenyltransferase AF1214 from archaeoglobus fulgidus, prenylated-FMN complex
6M8U · Flavin prenyltransferase ubix: “Crystal structure of ubix-like FMN prenyltransferase AF1214 from archaeoglobus fulgidus, prenylated-FMN…”. X-ray diffraction, 2 ligands (4LU, PO4), 1 pocket (best druggability 0.34). MolNFT v1 #156582…
- PDB
- 6M8U
- Type
- protein
- Length
- 183 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Flavin prenyltransferase ubix
- EC
- 2.5.1.129
- UniProt
- O29054
- Ligands
- 4LU, PO4
- Pockets
- 1 · best druggability 0.34
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Flavin prenyltransferase ubix (EC 2.5.1.129) | protein | 183 | 43% helix, 16% strand | O29054 |
Ligands and binding sites
- 4LU · 1-deoxy-5-O-phosphono-1-(3,3,4,5-tetramethyl-9,11-dioxo-2,3,8,9,10,11-hexahydro-7H-quinolino[1,8-fg]pteridin-12-ium-7-yl)-D-ribitol · ligand · chains A
- PO4 · Phosphate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 65 | 0.34 | 0.76 | 14 | empty |
Compared structures
- 6M8U · Crystal structure of UbiX-like FMN prenyltransferase AF1214 from Archaeoglobus fulgidus… · the same entry in another collection · chain A against A, TM-score 1.00
- O29054 · AlphaFold monomer V2.0 prediction for flavin prenyltransferase ubix (O29054) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O29054
- Elsewhere: RCSB PDB 6M8U · PDBe 6M8U · UniProt O29054
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