MolNFT v1 · #156220 · protein
Potato D-enzyme complexed with CA26
6LX2 · 4-alpha-glucanotransferase, CHLOROPLASTIC/AMYLOPLASTIC: “Potato D-enzyme complexed with CA26”. X-ray diffraction, 2 ligands (G4D, CA), 3 pockets (best druggability 0.79). MolNFT v1 #156220 on GenesisL1: 3D structure, binding sites…
- PDB
- 6LX2
- Type
- protein
- Length
- 523 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 4-alpha-glucanotransferase, CHLOROPLASTIC/AMYLOPLASTIC
- EC
- 2.4.1.25
- UniProt
- Q06801
- Ligands
- G4D, CA
- Pockets
- 3 · best druggability 0.79
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 4-alpha-glucanotransferase, CHLOROPLASTIC/AMYLOPLASTIC (EC 2.4.1.25) | protein | 523 | 45% helix, 12% strand | Q06801 |
Ligands and binding sites
- G4D · 4-deoxy-alpha-D-glucopyranose · ligand · 11 copies · chains A
- CA · Calcium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1173 | 0.79 | 0.80 | 122 | G4D |
| 2 | 152 | 0.52 | 0.79 | 27 | empty |
| 3 | 108 | 0.49 | 0.80 | 16 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q06801
- Elsewhere: RCSB PDB 6LX2 · PDBe 6LX2 · UniProt Q06801
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