MolNFT v1 · #156124 · protein

Crystal structure of a substrate binding protein from microbacterium hydrocarbonoxydans

6LU2: “Crystal structure of a substrate binding protein from microbacterium hydrocarbonoxydans”. X-ray diffraction, 3 pockets (best druggability 0.77). MolNFT v1 #156124 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6LU2
Type: protein
Length: 481 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Substrate binding protein
Pockets: 3 · best druggability 0.77

Structure

x-ray diffraction · 1 distinct chain · 34% helix, 25% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Substrate binding protein	protein	481	34% helix, 25% strand	—

Pockets

3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	960	0.77	0.79	90	empty
2	50	0.68	0.97	18	empty
3	175	0.54	0.80	34	empty

Modifications

Observed in the structure: 3 modified, 2 disulfide (engineered, disulfide).

Compared structures

6LU2 · Crystal structure of a substrate binding protein from Microbacterium hydrocarbonoxydans · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 6LU2 · PDBe 6LU2

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