MolNFT v1 · #156041 · protein

The complex structure of phf core domain peptide of tau and ANTIBODY'S Fab domain.

6LRA · Fab heavy chain: “The complex structure of phf core domain peptide of tau and ANTIBODY'S Fab domain.”. X-ray diffraction, 5 pockets (best druggability 0.55). MolNFT v1 #156041 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 6LRA
Type: protein
Length: 444 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Fab heavy chain; Fab light chain; Vqiink
Pockets: 5 · best druggability 0.55

Structure

x-ray diffraction · 3 distinct chains · 9% helix, 52% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
H	Fab heavy chain	protein	218	10% helix, 51% strand	—
L	Fab light chain	protein	220	8% helix, 55% strand	—
C	Vqiink	protein	6	0% helix, 0% strand	—

Pockets

5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	340	0.55	0.75	46	empty
2	93	0.37	0.75	19	empty
3	84	0.34	0.74	20	empty
4	79	0.31	0.73	17	empty
5	51	0.31	0.77	10	empty

Interfaces

3 interfaces between chains.

H–L · 1892 Å² buried · 19 hydrogen bonds · protein-protein
L–C · 281 Å² buried · 7 hydrogen bonds · protein-protein
H–C · 257 Å² buried · 5 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 5 disulfide (disulfide).

Compared structures

6LRA · The complex structure of PHF core domain peptide of tau and antibody's Fab domain. · the same entry in another collection · chain H against H, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 6LRA · PDBe 6LRA

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