MolNFT v1 · #156000 · protein
Structure of spermidine hydroxycinnamoyl transferases from arabidopsis thaliana
6LPV: “Structure of spermidine hydroxycinnamoyl transferases from arabidopsis thaliana”. X-ray diffraction, 2 ligands (COA, SPD), 4 pockets (best druggability 0.80). MolNFT v1 #156000 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 6LPV
- Type
- protein
- Length
- 434 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Spermidine hydroxycinnamoyl transferase
- EC
- 2.3.1.-
- UniProt
- O64470
- Ligands
- COA, SPD
- Pockets
- 4 · best druggability 0.80
Structure
x-ray diffraction · 1 distinct chain · 31% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Spermidine hydroxycinnamoyl transferase (EC 2.3.1.-) | protein | 434 | 31% helix, 24% strand | O64470 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1117 | 0.80 | 0.81 | 104 | COA, SPD |
| 2 | 87 | 0.45 | 0.80 | 19 | empty |
| 3 | 76 | 0.39 | 0.78 | 18 | empty |
| 4 | 71 | 0.35 | 0.76 | 23 | empty |
Compared structures
- 6LPV · structure of Spermidine hydroxycinnamoyl transferases from Arabidopsis thaliana · the same entry in another collection · chain A against A, TM-score 1.00
- O64470 · AlphaFold monomer V2.0 prediction for spermidine hydroxycinnamoyl transferase (O64470) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O64470
- Elsewhere: RCSB PDB 6LPV · PDBe 6LPV · UniProt O64470
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