MolNFT v1 · #155680 · protein
Crystal structure of zmcgta in complex with udp
6LF6 · Udp-glycosyltransferase 708A6: “Crystal structure of zmcgta in complex with udp”. X-ray diffraction, 1 ligand (UDP), 6 pockets (best druggability 0.82). MolNFT v1 #155680 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6LF6
- Type
- protein
- Length
- 457 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Udp-glycosyltransferase 708A6
- EC
- 2.4.1.-
- UniProt
- A0A096SRM5
- Ligands
- UDP
- Pockets
- 6 · best druggability 0.82
Structure
x-ray diffraction · 1 distinct chain · 49% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Udp-glycosyltransferase 708A6 (EC 2.4.1.-) | protein | 457 | 49% helix, 14% strand | A0A096SRM5 |
Ligands and binding sites
- UDP · Uridine-5'-diphosphate · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 903 | 0.82 | 0.83 | 71 | UDP |
| 2 | 69 | 0.74 | 0.98 | 18 | empty |
| 3 | 132 | 0.62 | 0.86 | 24 | empty |
| 4 | 59 | 0.60 | 0.91 | 19 | empty |
| 5 | 124 | 0.49 | 0.79 | 17 | empty |
Compared structures
- 6LF6 · Crystal structure of ZmCGTa in complex with UDP · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A096SRM5
- Elsewhere: RCSB PDB 6LF6 · PDBe 6LF6 · UniProt A0A096SRM5
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