MolNFT v1 · #155589 · protein

Crystal structure of beta-L-arabinobiose binding protein - native

6LCF · ABC transporter substrate binding component: “Crystal structure of beta-L-arabinobiose binding protein - native”. X-ray diffraction, 1 ligand (FUB), 4 pockets (best druggability 0.73). MolNFT v1 #155589 on GenesisL1: 3D structure…

PDB: 6LCF
Type: protein
Length: 806 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: ABC transporter substrate binding component
UniProt: A0A0A1GL90
Ligands: FUB
Pockets: 4 · best druggability 0.73

Structure

x-ray diffraction · 1 distinct chain · 45% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	ABC transporter substrate binding component	protein	403	45% helix, 17% strand	A0A0A1GL90

Ligands and binding sites

FUB · beta-L-arabinofuranose · ligand · 4 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1080	0.73	0.76	82	empty
2	189	0.62	0.83	41	FUB
3	213	0.62	0.82	38	FUB
4	50	0.30	0.76	11	empty

Interfaces

1 interface between chains.

A–B · 359 Å² buried · 4 hydrogen bonds · protein-protein

Compared structures

6LCF · Crystal Structure of beta-L-arabinobiose binding protein - native · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A0A1GL90
Elsewhere: RCSB PDB 6LCF · PDBe 6LCF · UniProt A0A0A1GL90

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