MolNFT v1 · #155533 · protein

Structure of CCDC50 and LC3B complex

6LAN · Coiled-coil domain-containing protein 50,MICROTUBULE…: “Structure of CCDC50 and LC3B complex”. X-ray diffraction, 1 pocket (best druggability 0.45). MolNFT v1 #155533 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6LAN
Type: protein
Length: 133 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Coiled-coil domain-containing protein 50,MICROTUBULE- associated proteins 1A/1B light…
UniProt: Q8IVM0, Q9GZQ8
Pockets: 1 · best druggability 0.45

Structure

x-ray diffraction · 1 distinct chain · 35% helix, 20% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Coiled-coil domain-containing protein 50,MICROTUBULE- associated proteins 1A/1B light chain 3B	protein	133	35% helix, 20% strand	Q8IVM0, Q9GZQ8

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	135	0.45	0.77	29	empty

Compared structures

6LAN · Structure of CCDC50 and LC3B complex · the same entry in another collection · chain A against A, TM-score 1.00
Q9GZQ8 · AlphaFold monomer V2.0 prediction for microtubule-associated proteins 1A/1B light chain… · a predicted model of the same protein · chain A against A, TM-score 0.91
Q8IVM0 · AlphaFold monomer V2.0 prediction for coiled-coil domain-containing protein 50 (Q8IVM0) · a predicted model of the same protein · chain A against A, TM-score 0.21

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8IVM0
Every structure of UniProt Q9GZQ8
Elsewhere: RCSB PDB 6LAN · PDBe 6LAN · UniProt Q8IVM0 · UniProt Q9GZQ8

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