MolNFT v1 · #155374 · protein + RNA
Crystal structure of human dead-box RNA helicase DDX21 at post-unwound state
6L5N: “Crystal structure of human dead-box RNA helicase DDX21 at post-unwound state”. X-ray diffraction, 2 ligands (ANP, MG). MolNFT v1 #155374 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6L5N
- Type
- protein + RNA
- Length
- 768 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9NR30
- Ligands
- ANP, MG
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 377 | — | Q9NR30 |
| C, D | — | rna | 7 | — | — |
Ligands and binding sites
- ANP · Phosphoaminophosphonic acid-adenylate ester · ligand · 3 copies · chains A, B
- MG · Magnesium ion · metal · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6L5N · Crystal structure of human DEAD-box RNA helicase DDX21 at post-unwound state · the same entry in another collection · chain A against A, TM-score 1.00
- Q9NR30 · AlphaFold monomer V2.0 prediction for nucleolar RNA helicase 2 (Q9NR30) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9NR30
- Elsewhere: RCSB PDB 6L5N · PDBe 6L5N · UniProt Q9NR30
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