MolNFT v1 · #155312 · protein
Crystal structure of salmonella enterica sugar-binding protein male
6L3E · Maltodextrin-binding protein: “Crystal structure of salmonella enterica sugar-binding protein male”. X-ray diffraction, 4 ligands (2ME, GLC, BGC), 4 pockets (best druggability 0.72). MolNFT v1 #155312 on GenesisL1: 3D structure…
- PDB
- 6L3E
- Type
- protein
- Length
- 365 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Maltodextrin-binding protein
- UniProt
- A0A0W3SG76
- Ligands
- 2ME, GLC, BGC, MG
- Pockets
- 4 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Maltodextrin-binding protein | protein | 365 | 45% helix, 20% strand | A0A0W3SG76 |
Ligands and binding sites
- 2ME · Methoxyethane · ligand · 4 copies · chains A
- GLC · alpha-D-glucopyranose · sugar · 4 copies · chains A
- BGC · beta-D-glucopyranose · sugar · chains A
- MG · Magnesium ion · metal · 3 copies · chains A
- TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · 2 copies · chains A
- GOL · Glycerol · additive · 2 copies · chains A
- MPD · (4S)-2-methyl-2,4-pentanediol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 401 | 0.72 | 0.83 | 32 | GLC, 2ME, MG |
| 2 | 55 | 0.40 | 0.81 | 15 | empty |
| 3 | 58 | 0.31 | 0.75 | 13 | 2ME |
| 4 | 58 | 0.26 | 0.72 | 15 | GOL |
Compared structures
- 6L3E · Crystal structure of Salmonella enterica sugar-binding protein MalE · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0W3SG76
- Elsewhere: RCSB PDB 6L3E · PDBe 6L3E · UniProt A0A0W3SG76
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.