MolNFT v1 · #155306 · protein
Psi-lhci supercomplex from physcometrella patens
6L35: “Psi-lhci supercomplex from physcometrella patens”. Electron microscopy, 10 ligands (CLA, BCR, CHL). MolNFT v1 #155306 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6L35
- Type
- protein
- Length
- 3,260 residues
- Chains
- 17
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q8MFA3, Q8MFA2, Q6YXQ2, A9SRC8, A0A2K1IKE2, A0A2K1J0L9, A9SJ10, A9SL09, Q6YXR3, Q6YXM2, A9SFV4, A9S7M7, Q6YXK4, A0A2K1K0C7, A9T399, A9TEM8, A0A2K1KN29
- Ligands
- CLA, BCR, CHL, LHG, LUT, XAT, SF4, LMG, PQN, DGD
Structure
electron microscopy · 17 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 742 | — | Q8MFA3 |
| B | — | protein | 733 | — | Q8MFA2 |
| C | — | protein | 80 | — | Q6YXQ2 |
| D | — | protein | 141 | — | A9SRC8 |
| E | — | protein | 62 | — | A0A2K1IKE2 |
| F | — | protein | 159 | — | A0A2K1J0L9 |
| G | — | protein | 98 | — | A9SJ10 |
| H | — | protein | 90 | — | A9SL09 |
| I | — | protein | 34 | — | Q6YXR3 |
| J | — | protein | 41 | — | Q6YXM2 |
| K | — | protein | 79 | — | A9SFV4 |
| L | — | protein | 159 | — | A9S7M7 |
| M | — | protein | 29 | — | Q6YXK4 |
| 2 | — | protein | 206 | — | A0A2K1K0C7 |
| 6 | — | protein | 192 | — | A9T399 |
| 3 | — | protein | 213 | — | A9TEM8 |
| 5 | — | protein | 202 | — | A0A2K1KN29 |
Ligands and binding sites
- CLA · Chlorophyll A · ligand · 144 copies · chains A, B, F, J, 3, K, L, M, I, H, G, 6, 2, 5
- BCR · Beta-carotene · ligand · 26 copies · chains A, B, J, F, G, I, K, L, 2, 3, 5
- CHL · Chlorophyll B · ligand · 12 copies · chains 2, 3, 6, 5, G
- LHG · 1,2-dipalmitoyl-phosphatidyl-glycerole · ligand · 6 copies · chains A, B, 6, 2, 3, 5
- LUT · (3R,3'R,6S)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol · ligand · 4 copies · chains 2, 6, 3, 5
- XAT · (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-diepoxy-5,6,5',6'-tetrahydro-beta,beta-carotene-3,3'-diol · ligand · 4 copies · chains 2, 6, 3, 5
- SF4 · Iron/sulfur cluster · ligand · 3 copies · chains A, B, C
- LMG · 1,2-distearoyl-monogalactosyl-diglyceride · ligand · 3 copies · chains F, J, 2
- PQN · Phylloquinone · ligand · 2 copies · chains A, J, B
- DGD · Digalactosyl diacyl glycerol (dgdg) · ligand · chains B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6L35 · PSI-LHCI Supercomplex from Physcometrella patens · the same entry in another collection · chain 5 against 5, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8MFA3
- Every structure of UniProt Q8MFA2
- Every structure of UniProt Q6YXQ2
- Every structure of UniProt A9SRC8
- Every structure of UniProt A0A2K1IKE2
- Every structure of UniProt A0A2K1J0L9
- Every structure of UniProt A9SJ10
- Every structure of UniProt A9SL09
- Every structure of UniProt Q6YXR3
- Every structure of UniProt Q6YXM2
- Every structure of UniProt A9SFV4
- Every structure of UniProt A9S7M7
- Every structure of UniProt Q6YXK4
- Every structure of UniProt A0A2K1K0C7
- Every structure of UniProt A9T399
- Every structure of UniProt A9TEM8
- Every structure of UniProt A0A2K1KN29
- Elsewhere: RCSB PDB 6L35 · PDBe 6L35 · UniProt Q8MFA3 · UniProt Q8MFA2 · UniProt Q6YXQ2 · UniProt A9SRC8 · UniProt A0A2K1IKE2 · UniProt A0A2K1J0L9 · UniProt A9SJ10 · UniProt A9SL09 · UniProt Q6YXR3 · UniProt Q6YXM2 · UniProt A9SFV4 · UniProt A9S7M7 · UniProt Q6YXK4 · UniProt A0A2K1K0C7 · UniProt A9T399 · UniProt A9TEM8 · UniProt A0A2K1KN29
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