MolNFT v1 · #155174 · protein
Crystal structure of plant phospholipase D alpha complex with phosphatidic acid
6KZ8: “Crystal structure of plant phospholipase D alpha complex with phosphatidic acid”. X-ray diffraction, 2 ligands (PA8, CA). MolNFT v1 #155174 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6KZ8
- Type
- protein
- Length
- 1,568 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q38882
- Ligands
- PA8, CA
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 784 | — | Q38882 |
Ligands and binding sites
- PA8 · 1,2-dioctanoyl-sn-glycero-3-phosphate · ligand · 2 copies · chains A, B
- CA · Calcium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6KZ8 · Crystal structure of plant Phospholipase D alpha complex with phosphatidic acid · the same entry in another collection · chain A against A, TM-score 1.00
- Q38882 · AlphaFold monomer V2.0 prediction for phospholipase D alpha 1 (Q38882) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q38882
- Elsewhere: RCSB PDB 6KZ8 · PDBe 6KZ8 · UniProt Q38882
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