MolNFT v1 · #155155 · protein

Crystal structure of phosphatidic acid transporter UPS1/MDM35 in complex with (2R)-3-(PHOSPHONOOXY)PROPANE-1,2-diyl dihexanoate

6KYL: “Crystal structure of phosphatidic acid transporter UPS1/MDM35 in complex with…”. X-ray diffraction, 1 ligand (44E). MolNFT v1 #155155 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6KYL
Type: protein
Length: 440 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: O60200, Q05776
Ligands: 44E

Structure

x-ray diffraction · 4 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	63	—	O60200
B	—	protein	154	—	Q05776
C	—	protein	63	—	O60200
D	—	protein	160	—	Q05776

Ligands and binding sites

44E · (2R)-3-(phosphonooxy)propane-1,2-diyl dihexanoate · ligand · 2 copies · chains B, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6KYL · Crystal Structure of Phosphatidic acid Transporter Ups1/Mdm35 in Complex with… · the same entry in another collection · chain D against D, TM-score 1.00
Q05776 · AlphaFold monomer V2.0 prediction for protein UPS1, mitochondrial (Q05776) · a predicted model of the same protein · chain D against A, TM-score 0.78
O60200 · AlphaFold monomer V2.0 prediction for mitochondrial distribution and morphology protein… · a predicted model of the same protein · chain A against A, TM-score 0.77

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O60200
Every structure of UniProt Q05776
Elsewhere: RCSB PDB 6KYL · PDBe 6KYL · UniProt O60200 · UniProt Q05776

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