MolNFT v1 · #155101 · protein

Crystal structure of fragmin F3 domain with calcium ion

6KWZ · Actin-binding protein fragmin P: “Crystal structure of fragmin F3 domain with calcium ion”. X-ray diffraction, 1 ligand (CA), 1 pocket (best druggability 0.64). MolNFT v1 #155101 on GenesisL1: 3D structure, binding sites and pockets…

PDB: 6KWZ
Type: protein
Length: 196 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Actin-binding protein fragmin P
UniProt: Q94707
Ligands: CA
Pockets: 1 · best druggability 0.64

Structure

x-ray diffraction · 1 distinct chain · 32% helix, 29% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Actin-binding protein fragmin P	protein	98	32% helix, 29% strand	Q94707

Ligands and binding sites

CA · Calcium ion · metal · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	401	0.64	0.78	37	empty

Interfaces

1 interface between chains.

A–B · 158 Å² buried · 1 hydrogen bond · protein-protein

Compared structures

6KWZ · Crystal structure of fragmin F3 domain with calcium ion · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q94707
Elsewhere: RCSB PDB 6KWZ · PDBe 6KWZ · UniProt Q94707

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