MolNFT v1 · #155058 · protein
Crystal structure of udp-rebb-SRUGT76G1
6KVL · Udp-glycosyltransferase 76G1: “Crystal structure of udp-rebb-SRUGT76G1”. X-ray diffraction, 2 ligands (UDP, AUO), 4 pockets (best druggability 0.82). MolNFT v1 #155058 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6KVL
- Type
- protein
- Length
- 448 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Udp-glycosyltransferase 76G1
- EC
- 2.4.1.-
- UniProt
- Q6VAB4
- Ligands
- UDP, AUO
- Pockets
- 4 · best druggability 0.82
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Udp-glycosyltransferase 76G1 (EC 2.4.1.-) | protein | 448 | 45% helix, 15% strand | Q6VAB4 |
Ligands and binding sites
- UDP · Uridine-5'-diphosphate · ligand · chains A
- AUO · (8alpha,9beta,10alpha,13alpha)-13-{[beta-D-glucopyranosyl-(1->2)-[beta-D-glucopyranosyl-(1->3)]-beta-D-glucopyranosyl]oxy}kaur-16-en-18-oic acid · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 851 | 0.82 | 0.84 | 82 | UDP, AUO |
| 2 | 56 | 0.40 | 0.81 | 15 | empty |
| 3 | 61 | 0.34 | 0.77 | 16 | empty |
| 4 | 79 | 0.33 | 0.74 | 16 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6VAB4
- Elsewhere: RCSB PDB 6KVL · PDBe 6KVL · UniProt Q6VAB4
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