MolNFT v1 · #155016 · protein
Structure of the african swine fever virus major capsid protein P72
6KU9 · B646L: “Structure of the african swine fever virus major capsid protein P72”. Electron microscopy, 15 pockets (best druggability 0.83). MolNFT v1 #155016 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6KU9
- Type
- protein
- Length
- 1,461 residues
- Chains
- 3
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- B646L
- UniProt
- Q5IZK2
- Pockets
- 15 · best druggability 0.83
Structure
electron microscopy · 1 distinct chain · 9% helix, 42% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | B646L | protein | 487 | 9% helix, 42% strand | Q5IZK2 |
Pockets
15 pockets found on a 1 Å grid, 9 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1116 | 0.83 | 0.84 | 105 | empty |
| 2 | 848 | 0.82 | 0.84 | 88 | empty |
| 3 | 860 | 0.81 | 0.84 | 87 | empty |
| 4 | 1181 | 0.80 | 0.82 | 106 | empty |
| 5 | 763 | 0.79 | 0.83 | 87 | empty |
Interfaces
3 interfaces between chains.
- B–C · 3083 Ų buried · 31 hydrogen bonds · protein-protein
- A–C · 3078 Ų buried · 31 hydrogen bonds · protein-protein
- A–B · 3072 Ų buried · 31 hydrogen bonds · protein-protein
Compared structures
- 6KU9 · Structure of the African swine fever virus major capsid protein p72 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5IZK2
- Elsewhere: RCSB PDB 6KU9 · PDBe 6KU9 · UniProt Q5IZK2
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