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Structure of the african swine fever virus major capsid protein P72

Analyse Structure of the african swine fever virus major capsid protein P72 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6KU9
Type: protein
Length: 1,461 residues
Chains: 3
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: B646L
UniProt: Q5IZK2
Pockets: 15 · best druggability 0.83

Structure

electron microscopy · 1 distinct chain · 9% helix, 42% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C	B646L	protein	487	9% helix, 42% strand	Q5IZK2

Pockets

15 pockets found on a 1 Å grid, 9 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1116	0.83	0.84	105	empty
2	848	0.82	0.84	88	empty
3	860	0.81	0.84	87	empty
4	1181	0.80	0.82	106	empty
5	763	0.79	0.83	87	empty

Interfaces

3 interfaces between chains.

B–C · 3083 Å² buried · 31 hydrogen bonds · protein-protein
A–C · 3078 Å² buried · 31 hydrogen bonds · protein-protein
A–B · 3072 Å² buried · 31 hydrogen bonds · protein-protein

Compared structures

6KU9 · Structure of the African swine fever virus major capsid protein p72 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5IZK2
Elsewhere: RCSB PDB 6KU9 · PDBe 6KU9 · UniProt Q5IZK2

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