MolNFT v1 · #154940 · protein

Crystal structure of sfgfp Y182TMSIPHE

6KRG · Green fluorescent protein: “Crystal structure of sfgfp Y182TMSIPHE”. X-ray diffraction, 3 ligands (CRO, NA, CL), 1 pocket (best druggability 0.80). MolNFT v1 #154940 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6KRG
Type: protein
Length: 219 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Green fluorescent protein
UniProt: A0A059PIQ0
Ligands: CRO, NA, CL
Pockets: 1 · best druggability 0.80

Structure

x-ray diffraction · 1 distinct chain · 9% helix, 53% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Green fluorescent protein	protein	219	9% helix, 53% strand	A0A059PIQ0

Ligands and binding sites

CRO · {2-[(1R,2R)-1-amino-2-hydroxypropyl]-4-(4-hydroxybenzylidene)-5-oxo-4,5-dihydro-1H-imidazol-1-yl}acetic acid · ligand · chains A
NA · Sodium ion · metal · chains A
CL · Chloride ion · ion · 3 copies · chains A
GOL · Glycerol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	132	0.80	0.97	27	CRO

Modifications

Observed in the structure: 2 cofactor, 1 modified (chromophore, nonstandard).

Compared structures

6KRG · Crystal structure of sfGFP Y182TMSiPhe · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A059PIQ0
Elsewhere: RCSB PDB 6KRG · PDBe 6KRG · UniProt A0A059PIQ0

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.