MolNFT v1 · #154923 · protein
Crystal structure of yijc from B. subtilis in complex with udp
6KQX · Uncharacterized udp-glucosyltransferase yjic: “Crystal structure of yijc from B. subtilis in complex with udp”. X-ray diffraction, 1 ligand (UDP), 2 pockets (best druggability 0.70). MolNFT v1 #154923 on GenesisL1: 3D structure…
- PDB
- 6KQX
- Type
- protein
- Length
- 327 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized udp-glucosyltransferase yjic
- EC
- 2.4.1.-
- UniProt
- O34539
- Ligands
- UDP
- Pockets
- 2 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized udp-glucosyltransferase yjic (EC 2.4.1.-) | protein | 327 | 38% helix, 15% strand | O34539 |
Ligands and binding sites
- UDP · Uridine-5'-diphosphate · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 717 | 0.70 | 0.77 | 77 | UDP |
| 2 | 64 | 0.29 | 0.73 | 16 | empty |
Compared structures
- 6KQX · Crystal structure of Yijc from B. subtilis in complex with UDP · the same entry in another collection · chain A against A, TM-score 1.00
- O34539 · AlphaFold monomer V2.0 prediction for uncharacterized udp- glucosyltransferase yjic… · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O34539
- Elsewhere: RCSB PDB 6KQX · PDBe 6KQX · UniProt O34539
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