MolNFT v1 · #154922 · protein

Crystal structure of yijc from B. subtilis

6KQW · Uncharacterized udp-glucosyltransferase yjic: “Crystal structure of yijc from B. subtilis”. X-ray diffraction, 5 pockets (best druggability 0.59). MolNFT v1 #154922 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6KQW
Type: protein
Length: 322 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized udp-glucosyltransferase yjic
EC: 2.4.1.-
UniProt: O34539
Pockets: 5 · best druggability 0.59

Structure

x-ray diffraction · 1 distinct chain · 38% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Uncharacterized udp-glucosyltransferase yjic (EC 2.4.1.-)	protein	322	38% helix, 16% strand	O34539

Ligands and binding sites

CIT · Citric acid · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	172	0.59	0.82	33	empty
2	351	0.58	0.76	47	CIT
3	52	0.34	0.78	18	empty
4	74	0.31	0.74	19	empty
5	61	0.30	0.75	15	empty

Compared structures

6KQW · Crystal structure of Yijc from B. subtilis · the same entry in another collection · chain A against A, TM-score 1.00
O34539 · AlphaFold monomer V2.0 prediction for uncharacterized udp- glucosyltransferase yjic… · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O34539
Elsewhere: RCSB PDB 6KQW · PDBe 6KQW · UniProt O34539

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